sofima issues

sofima.warp.render.tiles raise cv2.error: OpenCV(4.7.0) (-215:Assertion failed) dst.cols < SHRT_MAX && dst.rows < SHRT_MAX && src.cols < SHRT_MAX && src.rows < SHRT_MAX in function 'remap'

3

Following the stitching example for Sofima, the stitching is fine for small number of tiles, however I have 1631 EM tiles for stitching using the following tile_id_map ``` id_map =...

youssefmys

Adding support for Zarr stitching/fusion

2

Hello, this PR adds zarr_processor.py, an entrypoint for processing Zarr datasets. zarr_processor.py imports: - zarr_utils.py for general data loading - coarse_registration.py for initial coarse tile registration - fine_registration.py for elastic...

jwong-nd

Generalize more operations in map_utils to 3d, add support for a batch channel in elastic_mesh_3d, and switch the map_utils and mesh modules to pep-585 type annotations.

copybara-service[bot]

Fix type annotations in render_tiles in warp.py

3

In higher versions of python (>=3.8), you cannot import the `warp.py' module ![sofima-typing](https://user-images.githubusercontent.com/12106104/212165494-1e564ef9-bc3b-42bf-92ee-bd2a785dc594.png) This error is caused by tuple[int,int] which is not allowed in the function definition, as this is...

KyleLuther