Giovanni Palla
Giovanni Palla
Hi @sophieRAIBAUD sorruy for late reply, I think the results looks good. could I ask you to post this type of questions in https://discourse.scverse.org/ with squidpy tag? issues are more...
@alam-shahul I'd check out @ivirshup suggestion, calling scanpy directly. We provide a parallelized version but it'd be a bit of work to allow for non-genes to be handled. let us...
hi @sophieRAIBAUD , what type of integration do you have mind? some of the analysis functions we provide should be already usable in codex data. I'd be curious to hear...
hi @HelloWorldLTY I will close this issue due to inactivity, feel free to reopen
which axis order do you mean @wangjiawen2013 ?
what's the result of ``` adata.obs['leiden'].cat.categories ``` ?
thanks @wangjiawen2013 I'll take a look soon, sorry for delay!
hi @wangjiawen2013 , reposting here from the PR. I actually realized it's possible to just pass the order excpliticly, you can try out with this: ```python import squidpy as sq...
hi @wangjiawen2013 , you are talking about the heatmap on the right? If yes, unfortunately we don't have such visualization and it is no planned. However, it seems doable to...
it's actually really doable, keeping it open for reminder, maybe in the future