Giovanni Palla
Giovanni Palla
> Ok, sure so you are proposing a function moving obsm to X, right? So this would translate to: yes, something like that. > and then you can use adata_features...
ok yes, then making an extractor similar to what we alredy have I think might makes sense. Maybe teh extractor we have can me modified? also understand now about selecting...
> I'm not sure if its best practice to put these two different functionalities in one function? We could have a "destination" argument that can be either obs or X?...
I htink this is now done with `extract` and several tutorials, will close this.
it would be cool to have a multiplex partition based on layers/obsm see this https://github.com/theislab/scanpy/issues/1818
hi @annamath , thanks for your interest in squidpy! this is a very interesting question and we should provide at least an example on how that could be done. I'l...
hi @annamath sorry for late reply. > My main concern is that across samples the range of the z score is not comparable. Quick update from my side, I tried...
doable to be considered for next release
> shall we package napari/pyqt as well or create a subpackage? let's create a subpackage, talk on Fri about this
I believe this can be close as we have it in conda now