Giovanni Palla
Giovanni Palla
> make spatial-image==1.2.1 available in conda-forge. @giovp I see you closed this PR for it https://github.com/conda-forge/spatial-image-feedstock/pull/5, why? that update was done here https://github.com/conda-forge/spatial-image-feedstock/pull/6
all points addressed, spatialdata is back on conda
hi, I just saw that this discussion has been picking up. I work on the framework mentioned in this comment https://github.com/pandas-dev/pandas/issues/52166#issuecomment-2178473375 and we would be very happy if the dataframe-level...
> The current feature_dataset_presence_matrix only reports genes that have a total expression count > 0. Instead, it should report all genes that were listed in the original dataset. I'm not...
magic 🤩
mmh @JonatanSahar unfortunately I don't really know, I would transfer this issue to anndata as they might have seen this before
hi @selmanozleyen , yes, you probably noticed this https://github.com/ott-jax/ott/commit/036add26e4f4391479905e71df910f691f94478c , we might have to update the default to mirror the ott-jax default
> Essentially tried following the [Squidpy Xenium tutorial](https://squidpy.readthedocs.io/en/stable/notebooks/tutorials/tutorial_xenium.html) but using a `spatialdata` object. Failed when I tried to color my plot by Leiden colors. with this? https://github.com/scverse/squidpy_notebooks/pull/125
sounds great! defaults are convenient
I'll modify the marginals for the unbalanced fgw case with marginals != 1