Giovanni Palla comments

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                                            Giovanni Palla

Analyze Visium H&E data with h5ad

hi @asmlgkj , I think the cluster are computed using the notebook tutorial, so if you run the tutorial it should work!

Faster implementation available for `vectorize()`

is this related to #560 ?

Re-enable compression

it looks like it is, but we don't expose `storage_options` anymore.

Ligand-receptor plot always report Error

hi @ryrl970311 did you normalize and log1p the data before using this function?

[doc improvment] inconsistent usage of img_key and img_res_key in code base

hi @TTTPOB , thank you for pointing it out. Feel free to submit a PR for fixing the docstrings. Thank you!

Geographically weighted regression (GWR) for gene-gene correlation

hi @SNOL2 that looks like a very interesting method! If you would consider to submit a PR I would be happy to help.

Should more flags be infective (or have coinfective negations)?

can you post the whole traceback?

`rank2` lr initializer not reproducible between 0.4.3 and 0.4.4

thanks for taking a look @michalk8 ! > In terms of quantitative results, do you see worse results in terms of the OT maps? yes, as in costs and OT...

`rank2` lr initializer not reproducible between 0.4.3 and 0.4.4

I think this can be closed as was fixed in #494

Bounding box query vs polygon query for circles

> Ideally the polygon query is fast enough and we can drop the bounding box query implementation for points and shapes. good point, I can see that it's faster with...