Giovanni Palla

hi @dm8000 did you install it with pip or conda? I would try to re installl with either of the two methods.

ah it seems a really minor tolerance thingy, try to increase it to 16 should be fine ``` save_and_compare_images = image_comparer(ROOT, FIGS, tol=15) ```

hi @MertDemirdizen @sophieRAIBAUD sorry for late reply. This type of functionality is planned to be added to squidpy (there is an issue also there discussing the same). I'd close this...

hi @yotamcons , thanks a lot for the feedback, we'd really appreciate if you could submit a PR fixing these parts of the documentations that needs to be updated. Happy...

hi @lingxincheng08 can you check the solution posted here? https://github.com/IGS/gEAR/issues/386#issuecomment-1227212721 I believe the default might have changed

> @giovp looking at this again, it seems you drop the mixed up columns anyway ([scverse/squidpy@`fb069de`/squidpy/read/_read.py#L100](https://github.com/scverse/squidpy/blob/fb069ded7515e8a1386224d32344a8657cbecd2e/squidpy/read/_read.py#L100)) so I'd suggest having one code path with the correct column names. Please let...

> @giovp, should this change happen in scanpy or squidpy? I would make it happen in both and deprecate this function from the next release (as well as all the...

> Has this happened in squidpy already? yes, need one further clarification from @stephenwilliams22 and then will resolve also in squidpy.

> Splitting off new modules Finally, the idea of having IO functions go into their own package. I think this is a much bigger change, and I'd like to see...

this is gonna be worked sometime else in the future, closing due to inactivity