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Published 20 hours ago • verified publisher icon scverse

Problem in Spatial Umap Plot

Open lingxincheng08 opened this issue 2 years ago • 1 comments

I was trying the spatial tutorial by copy and paste the same code on the tutorial(https://scanpy-tutorials.readthedocs.io/en/latest/spatial/basic-analysis.html). However, when I run plt.rcParams["figure.figsize"] = (4, 4) sc.pl.umap(adata, color=["total_counts", "n_genes_by_counts", "clusters"], wspace=0.4) I got figures like: 截屏2022-07-07 下午8 45 16 However the real resutl should be 截屏2022-07-07 下午8 45 53 I am not sure what is happening... My version is scanpy 1.8.1. May I get some help on that? Thanks!

lingxincheng08 avatar Jul 07 '22 12:07 lingxincheng08

hi @lingxincheng08 can you check the solution posted here? https://github.com/IGS/gEAR/issues/386#issuecomment-1227212721 I believe the default might have changed

giovp avatar Sep 16 '22 16:09 giovp

Hi @lingxincheng08, did the above solution help you resolve the issue? :)

eroell avatar Oct 05 '23 09:10 eroell

We will close the issue for now, hopefully you obtained the expected behaviour :)

However, please don't hesitate to reopen this issue or create a new one if you have any more questions or run into any related problems in the future.

Thanks for being a part of our community! :)

eroell avatar Oct 12 '23 09:10 eroell