Gianluca Tomasello comments

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                                            Gianluca Tomasello

adding nearest and distance to point methods to lookup3d

@dsehnal I further improved performances for k=1 situations where is unnecessary to use heap.extractMinimum(). I think as well this could be further improved but for now I'm happy as it...

adding nearest and distance to point methods to lookup3d

@dsehnal yes thanks. I forgot to tell I already mentioned this under unreleased section on change log.

Which is the cheapest way to find the minimum distances between each element of a Structure and a reference Structure?

@dsehnal thanks for pointing to that. In my understanding bonds are computed by finding all elements within a max radius. But in my case I don't have a radius limit....

Which is the cheapest way to find the minimum distances between each element of a Structure and a reference Structure?

@arose yes, it is. I'm closing this

Build geometry and render separately when importing pymol as a module

At the moment I need to discriminate between single-threaded geometry building phase and multi-threaded rendering phase. A workaround I have found could be to exec the command ```cmd.ray(renderer=2)``` after the...

Build geometry and render separately when importing pymol as a module

I also noticed a different behavior when running the following code in batch mode with and without the ```cmd.ray(renderer=2)``` : ```py from pymol import cmd cmd.fetch("1c0k",async=0) cmd.set("gaussian_resolution",4) cmd.set("gaussian_b_floor",120) cmd.map_new("map","gaussian",1,"1c0k") cmd.isosurface("iso1","map",1)...

Gianluca Tomasello

adding nearest and distance to point methods to lookup3d

adding nearest and distance to point methods to lookup3d

Which is the cheapest way to find the minimum distances between each element of a Structure and a reference Structure?

Which is the cheapest way to find the minimum distances between each element of a Structure and a reference Structure?

Build geometry and render separately when importing pymol as a module

Build geometry and render separately when importing pymol as a module

Unexpected spheres rendering using setShowRelated( )

VRML2 color export problem on cylinders making nucleotides borders

PEPTIDE NUCLEIC ACID (1PNN) broken cartoon

PEPTIDE NUCLEIC ACID (1PNN) broken cartoon