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New module: presto/filterseq

Open snafees opened this issue 1 year ago • 2 comments

Adding presto filterseq nf module along with test data

PR checklist

Closes #XXX

  • [x] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [x] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [x] If necessary, include test data in your PR.
  • [x] Remove all TODO statements.
  • [x] Emit the versions.yml file.
  • [x] Follow the naming conventions.
  • [x] Follow the parameters requirements.
  • [x] Follow the input/output options guidelines.
  • [x] Add a resource label
  • [x] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • [ ] PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [ ] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [ ] PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

snafees avatar Oct 11 '22 11:10 snafees

@nf-core-bot fix linting

ggabernet avatar Oct 12 '22 08:10 ggabernet

@nf-core-bot fix linting

ggabernet avatar Oct 12 '22 11:10 ggabernet

Closing this PR as I am working on it now with the new modules template with nf-test

ggabernet avatar Nov 29 '23 15:11 ggabernet