deTiN
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getzlab
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Hi, We use Canvas in our somatic CNA calling workflow. Is it possible to use the output of Canvas to create the aSCNA segmentation file required for detin? In particular,...
Hi I got this error message when running deTiN on my own data. I have tried it with the example_data and it runs fine and produces output. I think this...
hi, we just installed deTin recently. Python3.7 was required. We also installed all packages. When we tried to run the example data with the command recommended: python3.7 deTiN/deTiN.py --mutation_data_path example_data/HCC_10_90.call_stats.pon_removed.txt...
Hi, i have adjacent normal sample, so i want to check there is tumor in sample. so i try using deTiN, but gatk does not support AllelicCNV. and i try...
The VCF spec demands that the samples' column names match entries in the header (e.g. if `##normal_sample=MY_NORMAL` is present in the header, then the column for the normal should be...
I was wondering if and how it's possible to run deTiN using only SSNV data. Running deTiN without any input produces the error message "One of CN data or SSNV...
