dgenies
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genotoul-bioinfo
Dotplot large Genomes in an Interactive, Efficient and Simple way
After launching a batch we can follow its progress with the log page. It would be nice to know which query and reference each line corresponds to.
Things that can be useful: - Provide user the command line used for alignment. It can be something displayed when loading the plot, or a file that can be downloaded...
It would be nice to have a selector in the user interface to automatically add swapped chromosome background colors such as in https://www.biorxiv.org/content/10.1101/2022.03.31.486393v1.full.pdf Fig 3.
**Describe the bug** In webserver mode, when asking for Query fasta file, D-Genies try to send an email when `send_mail_status = False` in configuration file `application.properties` ``` 127.0.0.1 - -...
Improving the adjustment of the chromosomes name to the display space. Modify the way of display the name on zoom.
Dear, Thank you for the excellent plotting software. The setting `max_nb_lines` controls how many highest scoring alignments to include in the dot plot, and is fixed in the source code...
**Describe the bug** When running D-Genies for the first time, if more than one thread/worker is set, the database initialization produces the following error. It appends when D-Genies is run...
**Describe the bug** When launched with `mod_wsgi`, the crontab is populated as follow (you need to access the website once to populate the crontab - lazy loading from apache): ```...
**Describe the bug** `minimap2` key must exists in tools.yaml **To Reproduce** Steps to reproduce the behavior: 1. In [tools.yaml](https://github.com/genotoul-bioinfo/dgenies/blob/master/tools.yaml) Replace `minimap2` key by something else like `minimap2-2.11`and set the `minimap2`...
Add possibility to have a banner/header/footer in order to display messages, notice and links without editing package code itself
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Dotplot large Genomes in an Interactive, Efficient and Simple way