Gavin Douglas

Thanks for looking into it Pierre! I should have mentioned that I could reproduce this problem with both EPA-ng v0.3.5 and v0.3.6. Best, Gavin

Quick note that I'm running into the same issue and I came to the same conclusion. I emailed the author about this as they may not see these issues.

For anyone else confused by the lack of a vcf file in the output - see this issue: #24 You need to use the related tool, harvesttools, to generate the...

For anyone else confused by the lack of a vcf file in the output - see this issue: https://github.com/marbl/harvest/issues/24 You need to use the related tool, harvesttools, to generate the...

I was having similar problems finding a compatible version of snakemake, but after some trial and error I was able to get snakemake v5.2.0 to work with `go_metacompass.py`.