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Published 20 hours ago • verified publisher icon cssmillie

Filtering based on coverage

Open lch14forever opened this issue 5 years ago • 1 comments

Hi,

In the preprocessing script 5.filter_np.py, should the filter be cov != 0 instead?

https://github.com/cssmillie/StrainFinder/blob/745a20a6633c53fa5210ae37912d667b6e3645e7/preprocess/5.filter_np.py#L96

lch14forever avatar Jun 17 '19 07:06 lch14forever

Quick note that I'm running into the same issue and I came to the same conclusion. I emailed the author about this as they may not see these issues.

gavinmdouglas avatar Aug 24 '21 19:08 gavinmdouglas