Garrett Stevens

"blockmap" with "deflate" and no output file creates invalid ZIP

2

I'm using electron-builder to create ZIP files, which uses app-builder internally. Specifically, it calls app-builder with the "blockmap" and "deflate" options and no output file. Sometimes when I run command-line...

Ocean Beach theme uses compass-vertical-rhythm: https://github.com/KyleAMathews/typography.js/blob/33d86df7e0d7f44cd1a71c8bd8791bdb71a7ecc5/packages/typography-theme-ocean-beach/src/index.js#L5 But it's not in the dependencies: https://github.com/KyleAMathews/typography.js/blob/33d86df7e0d7f44cd1a71c8bd8791bdb71a7ecc5/packages/typography-theme-ocean-beach/package.json#L6-L9 This causes `gatsby develop` to fail for me (I'm using Yarn v2): ``` A package is trying...

Add info icon with tooltip describing meaning of fmin and fmax in "Partial"

4

Fixes #2648 by adding a tooltip that describes what "fmin" and "fmax" are in the context of "Partial" The text reads: "Indicates that the end of a gene is partial....

In LGV import, update sequence when assembly is changed

4

Fixes #3126

Extend theme with module augmentation

1

This uses [module augmentation](https://www.typescriptlang.org/docs/handbook/declaration-merging.html#module-augmentation) to add the tertiary, quaternary, and base colors to our theme in TypeScript. This way, we can get rid of the `@ts-ignore`s that are used whenever...

Use "code" instead of "key" for undo/redo keyboard event

1

Ctrl+Shift+Z for redo wasn't working for me, since it was using the `event.key` attribute being "z", and my system detects "Z" (upper case) for that case. This changes it to...

In the LGV's overview bar (where the whole chromosome or ideogram is displayed), if you click on a location and drag to the right and let go, it navigates the...

In our volvox config, we have a track config like this: ```json { "type": "MultiQuantitativeTrack", "trackId": "volvox_microarray_multi", "name": "MultiWig", "assemblyNames": ["volvox"], "adapter": { "type": "MultiWiggleAdapter", "subadapters": [ { "source": "k1",...

Add a custom protocol handler for JBrowse Desktop

23

There is an example [here](https://www.electronjs.org/docs/latest/tutorial/launch-app-from-url-in-another-app) of how to register an electron app as a handler for a custom protocol. If we regester e.g. the `jbrowse://` protocol, we could use a...

Make "global plugins" for JBrowse Desktop

1

As discussed in grooming, global plugins would be loaded when the start screen is loaded on desktop, meaning there will need to be a plugin loader created then. These plugins...