Garrett Stevens

Oclif does not work with Yarn 4 PnP

4

Do you want to request a *feature* or report a *bug*? ----------------------------------------------------- Feature I guess? Unless it's supposed to work with Yarn 4, in which case this is a bug....

Add ability for views to pin elements, such as headers and tracks

16

This adds the concept of pinning (or sticky positioning, using CSS positioning terminology) various UI elements. First, the view menu bar is pinned for all views, so you can access...

gCNV adapter and track

1

There's some info about gCNV output files and a sample of what a track might look like here (sample is on IGV web): `https://github.com/igvteam/igv.js/pull/1055` (sample reproduced below).  I think...

Feature request: Add ability to add help text/link to widget

2

This came up during an Apollo meeting today. There was a request to add some way to add some help text and possibly a link to docs to a widget....

"undefined" chromosome in CDS in feature details widget

4

In CDS features in the feature details widget, the chromosome can be "undefined":  Seen in this session, FBXL6 gene: https://s3.amazonaws.com/jbrowse.org/code/jb2/main/index.html?config=test_data%2Fconfig_demo.json&session=share-hyWPKSAEXQ&password=04I8J

Right now you can open two instances of JBrowse Desktop and point them at the same session, so they end up overwriting each other. One way to handle this would...

Use something like [basic-ftp](https://github.com/patrickjuchli/basic-ftp) and wrap a GenericFilehandle around it so we can access files on FTP. Will get routed to the main process via IPC for fetching.

feat(tsconfig): add ability to extend base tsconfig

1

Fixes #176 by using TypeScript's `parseJsonConfigFileContent()`, which resolves the "extends" in a tsconfig and merges the various options in the base and extending tsconfigs. I wasn't what was a good...

tsconfig "extends" not used

1

Thanks for this project! It's been really useful to me. One thing I noticed is that it looks like the tsconfig.json is parsed here: https://github.com/oclif/config/blob/25ea41291d69c6f8878aa793fd0fd41469acccce/src/ts-node.ts#L37-L40 and used in a few...

Move plugin setup script to development tools

4

This proposes moving the plugin template setup script to `@jbrowse/development-tools` instead of having it in the plugin template. The script is meant to be run once when setting up the...