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Published 20 hours ago • verified publisher icon galaxyproject

Tool request: AGAT

Open gallardoalba opened this issue 3 years ago • 1 comments

From the original repository: https://github.com/NBISweden/AGAT

AGAT has the power to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised gff3 format. Over the years it has been enriched by many many tools to perform just about any tasks that is possible related to GTF/GFF format files (sanitizing, conversions, merging, modifying, filtering, FASTA sequence extraction, adding information, etc).

gallardoalba avatar Jun 09 '22 12:06 gallardoalba

Good request. In particular since their docs mention that gff2gtf conversion is done correctly https://agat.readthedocs.io/en/latest/gff_to_gtf.html .. compared to other tools

bernt-matthias avatar Aug 08 '22 11:08 bernt-matthias

Included here https://github.com/bgruening/galaxytools/pull/1310. It was implemented only partially, because include a bunch of functionalities. For this reason was included in Bjorn repository.

gallardoalba avatar May 30 '23 08:05 gallardoalba