FRASER
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gagneurlab
FRASER - Find RAre Splicing Events in RNA-seq
Dear C. Mertes, I'm running FRASER on 61 PBMC samples for the detection of aberrant splicing events in these samples. Counting of the spliced and none spliced reads and parameter...
Hi， I found the following problems when viewing the FRASER results of genes (The red lines are removed in the gene result):  These data on the graph show that...
Dear sir, I tried to use fds
Hi, I am trying to create the FRASER object using the function `FraserDataSet` and here is the code that I ran ``` settings
Hi. I follow vignette with my bam file. However, When I entered **annotateRangesWithTxDb (fds, txdb=txdb, orgDb=orgDb)**, i got warning and error message : 403 genes were dropped because they have...
Hello! I was trying to use FRASER with some test samples, and got error at **countRNAdata** step, my commond and output: ``` > fds
I'm trying to run the latest version of FRASER. Everything works until I get to the results(..) function. The following code ``` library(FRASER) library(annotables) library(data.table) library(ggplot2) library(ggpubr) library(dplyr) library(purrr) library(ggrepel)...
for fraser junction count analysis, in default setting: ScanBamParam(mapqFilter=0), but sometime, we can see several duplicated reads with mapQ=0 and reads with multiple locations with mapQ=0, it can also cause...
As we do not currently use the `group` or `condition` column in `colData` we need to remove it from the package to not confuse users as in #26.
