Error in working directory

[lyj95618]

Hi,

I am trying to create the FRASER object using the function FraserDataSet and here is the code that I ran

settings <- FraserDataSet(colData=annotated_toftable, workingDir="/hpf/largeprojects/ccmbio/yliang/smital_ASE/")

Both workingDir(settings) and settings@workingDir showed the workingDir that I specified. However when I want to check the FraserObject by just running settings, this is the error message that I got

Fri Sep 16 13:17:51 2022: The given working directory '/localhd/125692/Rtmpu2AQgw/FRASER' does not exists. We will create it.

Warning message in dir.create(object@workingDir, recursive = TRUE):
“cannot create dir '/localhd/125692', reason 'Permission denied'”
ERROR while rich displaying an object: Error in h(simpleError(msg, call)): error in evaluating the argument 'object' in selecting a method for function 'scanBamParam': invalid class “FraserDataSet” object: Make sure we can write to the given working directory ' /localhd/125692/Rtmpu2AQgw/FRASER '.

Why the working directory showing here is different from the one that I specified? I am running FRASER on a cluster so I can't change the permission. I am using R 4.0.3 and the FRASER version is FRASER 1.2.1

Update: Tried to install the package from github/c-mertes/FRASER, which updated the version to 1.9.1. The error disappeared. I don't know why the version I got from bioconductor is 1.2.1

Thanks for the help! Laur