FRASER
FRASER copied to clipboard
"Please provide hgnc symbols to compute gene p values!" error
I'm trying to run the latest version of FRASER. Everything works until I get to the results(..) function. The following code
library(FRASER)
library(annotables)
library(data.table)
library(ggplot2)
library(ggpubr)
library(dplyr)
library(purrr)
library(ggrepel)
library(plotly)
library(stringr)
library(RColorBrewer)
library(ggsci)
library(ggplot2)
library(gtable)
fds = loadFraserDataSet(".")
res = results(fds, padjCutoff={padj_threshold}, zScoreCutoff=NA, deltaPsiCutoff={delta_psi_threshold})
terminates with a "Please provide hgnc symbols to compute gene p values!" error.
I'm having a hard time tracing how the results(..) function even reaches that error which AFAIK is only raised by the aberrant(..) function when aggregate is True.