FRASER
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"Please provide hgnc symbols to compute gene p values!" error
I'm trying to run the latest version of FRASER. Everything works until I get to the results(..) function. The following code
library(FRASER)
library(annotables)
library(data.table)
library(ggplot2)
library(ggpubr)
library(dplyr)
library(purrr)
library(ggrepel)
library(plotly)
library(stringr)
library(RColorBrewer)
library(ggsci)
library(ggplot2)
library(gtable)
fds = loadFraserDataSet(".")
res = results(fds, padjCutoff={padj_threshold}, zScoreCutoff=NA, deltaPsiCutoff={delta_psi_threshold})
terminates with a "Please provide hgnc symbols to compute gene p values!" error.
I'm having a hard time tracing how the results(..) function even reaches that error which AFAIK is only raised by the aberrant(..) function when aggregate is True.
The error is actually happening in plotAberrantPerSample(..)