FRASER

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Merging Multiple Samples

1

Dear C. Mertes, I would like to run FRASER on a dataset of 47 BAM files. However, when running the countRNAData function I keep getting out of memory errors. Is...

GuoLabUCSD

vyepez88

fds -> object in setMethod strandSpecific

vyepez88

Incompatibility of fds objects between versions

1

I have saved to a file a FRASER object that has been generated with version 1.2.1. Then, I have tried to load it with the latest version of FRASER (1.99.2)...

adelpozomt

Questions about optimal q and implementation="AE" vs. "PCA"

4

I understand using different values of q can significantly affect results, so I wanted to ask whether I'm choosing q and the `implementation` arg correctly. My dataset is 54 affected...

bw2

install devtools

1

error in installing devtools ft_cache.h:9:10: fatal error: ft2build.h: No such file or directory

Eyulaochen

Understanding the concept behind the metrics used for FRASER calculations

6

@c-mertes @ischeller It will be great if you guys can explain more about the metrics sigh3 and sigh5 and theta 5 and theta3 used for the calculations of FRASER. It...

jjyotikataria

Hi, I got an error (below) while running FRASER on a large dataset. Can you please help me to resolve this error? Computing PCA ... Fitting rho ... Error in...

Vinniporiya

Dear C. Mertes, I would like to analyze alternative splicing events in non-model organisms such as different mouse subspecies (e.g., Mus musculus castaneus). Is it possible to do this? I...

amitjavilaventura

Dear C. Mertes, At the moment I'm running FRASER on 61 untreated PBMC samples and 60 treated PBMC samples. However we are running into some issues with HPC infrastructure. The...

lemdcock