Francois Serra

also with some kind of gaussian smoothing

bed files would be pared and plotted below the matrix similarly to HiCplotter (https://github.com/kcakdemir/HiCPlotter) Instead of populating command-line with many arguemnts, allow to input a config file which would contain...

Writing and reading submatrices (not full chromosome) not working. probably due to a scaling problem. thanks to @paulasoler and @martirenom for finding the bug!!! :angry: :)

TADbit bin: new output format (for juicer mainly)

1

find a way to generate hic or/and cooler format

https://pythonhosted.org/an_example_pypi_project/buildanduploadsphinx.html

and perhaps conda

copy or even call the script. Output the list of non normalized insulation indexes...

simple algorithm to call loops, or at least validate them.

make it :stuck_out_tongue: also store some descriptive statistics