Guangyuan(Frank) Li
Guangyuan(Frank) Li
When running `sq.gr.nhood_enrichment` function, I got the warning below: ``` 100%|██████████| 1000/1000 [00:00
right now gsea run is required, but actually it is not part of the core algorithm of scTriangulate but just for visuliazation purpouse.
https://github.com/Barski-lab/workflows/blob/master/tools/dockerfiles/scripts/sc_split_atac.py instead of using pool, use shared_memory to reduce memory overhead
1. need rust please refer to (https://github.com/zqfang/GSEApy/issues/163)
Hello, Thanks so much for developing this wonderful tool! I would like to confirm if my interpretation of circExplorer2-reported circRNA coordinates are correct? So after a few manual inspections of...
Dear users, It has been brought to my attention that there's a typo in my paper supplementary regarding the beta prior, so in the supplementary, it said: ![Screen Shot 2023-05-19...
It has been brought to my attention that a new change post pandas v2 will break the gseapy function due to the deprecated `.append()` function, you may encounter error like...
>>> adata.write('test.h5ad') ``` Traceback (most recent call last): File "/opt/anaconda3/envs/sctri_env/lib/python3.7/site-packages/anndata/_io/utils.py", line 214, in func_wrapper return func(elem, key, val, *args, **kwargs) File "/opt/anaconda3/envs/sctri_env/lib/python3.7/site-packages/anndata/_io/specs/registry.py", line 175, in write_elem _REGISTRY.get_writer(dest_type, t, modifiers)(f, k,...
instead of specifying human or mouse, let the program directly detect and determine that.
Hello @RalfG, First thanks very much for developing such wonderful tool, I really enjoyed working with it! I have a question regarding how to apply MS2rescore to bruker (.d) or...