DeepImmuno
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A typo in the paper supplementary regarding the beta prior
Dear users,
It has been brought to my attention that there's a typo in my paper supplementary regarding the beta prior, so in the supplementary, it said:
But actually, Beta(32,1)
is used for positive-high, Beta(30,1)
is used for positive-intermediate and positive, it can be seen from the code:
https://github.com/frankligy/DeepImmuno/blob/main/src/immuno3_3.py#L17-L43
def assign_prior(label):
if label == 'Positive-High':
return (32,1) # beta(15,1) mean=0.93, std = 0.05
elif label == 'Positive' or label == 'Positive-Intermediate':
return (30,1) # beta(10,1) mean = 0.90 std = 0.08
elif label == 'Positive-Low':
return (28,1) # beta(5,1) mean = 0.83, std = 0.14
elif label == 'Negative':
return (3,3) # beta(3,4) mean = 0.42, std = 0.17
I apologize for any confusion caused by that, and please feel free to reach out for any questions!
Sincerely, Frank