Guangyuan(Frank) Li

Hi @michalk8, thanks a lot for the reply! yes that's what I did for now by just converting the "nan" to a valid value, and I was wondering the same...

As Misha suggested, I can change the gseapy codebase so that it doesn't require network connection

[https://github.com/michael-kotliar/GSEApy/commit/6135cb9f0618f293b2f7586b81d56d97f3040c46](https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fmichael-kotliar%2FGSEApy%2Fcommit%2F6135cb9f0618f293b2f7586b81d56d97f3040c46&data=05%7C01%7Cli2g2%40mail.uc.edu%7C50ce0aa83bf84f66a18308daa2f93af1%7Cf5222e6c5fc648eb8f0373db18203b63%7C1%7C0%7C638001488573926420%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=7ZcsKhoX9yJ44apDl97SPmo%2Fnml5oEQXMfla87%2BUBPI%3D&reserved=0)

Sorry for the confusion, this is a file I kept for my own record (some scratches, notes I made while learning), so it is not intended as a micro book...

It seems to be a conda version issue, mine is conda 4.10.1 and my mac version is 11.4 See (https://github.com/conda/conda/issues/9678) I carefully compare our dependencies difference, and they are the...

Hello @KANG-BIOINFO just want to give you an update here, as I realize that the another potential cause is due to `scrublet` package, look at this issue (https://github.com/swolock/scrublet/issues/28). I experienced...

Hello, Thanks for the interests in DeepImmuno tool! I am sorry for the confusion here. In the paper, I discarded 13 indices that have "NA" in the downloaded index files...

also thinking about using dask for MPI across multiple cores

Hi @awesome-crab, Thanks for reaching out! The whole folder /new_imgt_scraping is not required for running the program but just for reproducibility purpose as I got asked regarding how I curated...

Hi @awesome-crab Thanks for letting me know! I indeed haven't thought about that possibility for windows, I will keep this issue open so other users can refer to it later....