Flatiron Institute
Flatiron Institute
DeepFRI
Deep functional residue identification
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
cufinufft
Nonuniform fast Fourier transforms of types 1 and 2, in 1D, 2D, and 3D, on the GPU
deepblast
Neural Networks for Protein Sequence Alignment
disBatch
Tool to distribute a list of computational tasks over a pool of compute resources. The pool can grow or shrink.
finufft
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
fmm2d
This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory machine.