Flatiron Institute

Results 30 repositories owned by Flatiron Institute

CaImAn

609
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356
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Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

CaImAn-MATLAB

247
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146
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Complete Matlab pipeline for large scale calcium imaging data analysis

NoRMCorre

132
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84
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Matlab routines for online non-rigid motion correction of calcium imaging data

cufinufft

81
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17
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Nonuniform fast Fourier transforms of types 1 and 2, in 1D, 2D, and 3D, on the GPU

deepblast

101
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17
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Neural Networks for Protein Sequence Alignment

disBatch

34
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8
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Tool to distribute a list of computational tasks over a pool of compute resources. The pool can grow or shrink.

figurl

29
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3
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Shareable, interactive scientific figures in the cloud

finufft

241
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69
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Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

fmm2d

21
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10
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This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory machine.