DiscoVista
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esayyari
what is wrong with my installation? the contents of error.log file are: [1] "genetrees/filtered/results" [1] "here" [1] "/public/home/Wanggs/software/DiscoVista/example/1KP/genetrees/filtered/results" [1] 1 [1] "/public/home/Wanggs/software/DiscoVista/example/1KP/genetrees/filtered/results" [1] "bootstrap is numeric" [1] "merging finished!" [1]...
Hi there: I'm trying to run the frequency and using example file. But something is wrong. I don't know how to solve it. I download this zip file, and add...
Hi~ I met the following error: number of contracted trees is :953 Number of trees to analyze is: 953 WARNING some support was not available. Ignoring this branch length was:...
①、update main_depict_clades.R > Warning messages: > In type.convert.default(X[[i]], ...) : > 'as.is' should be specified by the caller; using TRUE When this occurs, R does not convert character vectors into...
Hi, Thanks for developing the fancy DiscoVista. I tested the example of frequency analysis and it generated results as expected (like `relativeFreq.pdf` and `tree.pdf`), which may suggest that DiscoVista was...
Hi there, I'm trying to execute DiscoVista with the example data for this command line: $WS_HOME/DiscoVista/src/utils/discoVista.py -a parameters/annotation-1.txt -m 5 -p relativeFreq/astral.trim50genes33taxa.no3rd.final-FNA2AA/ -o relativeFreq/astral.trim50genes33taxa.no3rd.final-FNA2AA/results/anot1 -g Base Modified to fit the...
python /repository/DiscoVista/src/utils/map_names.py names.txt annotaation7.txt /data/BUSCO_genetreesv4/results/freqQuad.csv /data/BUSCO_genetreesv4/results/freqQuadCorrected.csv /data/BUSCO_genetreesv4/results/main.tre.out null device 1 Loading required package: reshape2 Loading required package: ggplot2 Warning message: In .doLoadActions(where, attach) : trying to execute load actions without...
Hi, I am running DiscoVista for gene tree discordance analysis (-m 1) and it never finishes running. I am working with 8 different datasets comprising 307 gene trees of 287...
Hi, I'm getting this error when `depict_clades.R` is executed. ``` [1] "species/results" [1] "here" [1] "/user/work/tk19812/software/DiscoVista/example/1KP/species/results" [1] 0 [1] "/user/work/tk19812/software/DiscoVista/example/1KP/species/results" [1] "bootstrap is numeric" [1] "merging finished!" [1] "working on...
Why does the "KeyError: 'WS_HOME'" occur? But it was normal several months ago? Did anyone encounter the same problem as me? python2 /data/01/user156/fenshu/ONT/01.genomic_comparison/5.phylogenetic/split_window/DiscoVista/src/utils/discoVista.py -p ./tree -m 5 -a annotation.txt -o...
