TypeError: float() argument must be a string or a number

[Galaxy-228]

Hi~ I met the following error: number of contracted trees is :953 Number of trees to analyze is: 953 WARNING some support was not available. Ignoring this branch length was: 0.0394150663 clade was: [<Taxon 0x7efd625e5a90 'Aal'>, <Taxon 0x7efd625e5c90 'Dni'>, <Taxon 0x7efd625e5bd0 'Ali'>] tree is: (Cpa:0.474046,Tha:0.0847808929,(Aar:0.117421439...... Traceback (most recent call last): File "/repository/DiscoVista/src/utils/discoVista.py", line 59, in analyzer.analyze() File "/repository/DiscoVista/src/utils/analyze.py", line 302, in analyze self.treesAnalyses() File "/repository/DiscoVista/src/utils/analyze.py", line 140, in treesAnalyses find_clades2.main(opt.names, opt.clades, outFile, multiplier, searchFiles) File "/repository/DiscoVista/src/utils/find_clades2.py", line 321, in main mono.analyze(tree, treeName, mult) File "/repository/DiscoVista/src/utils/find_clades2.py", line 172, in analyze self.analyze_clade(k, v, clade_comp, tree, treeName, mult, allBiparts) File "/repository/DiscoVista/src/utils/find_clades2.py", line 155, in analyze_clade self.check_mono(tree, treeName, taxa, name, len(taxa) == len(clade), ofile, mult, allBiparts) File "/repository/DiscoVista/src/utils/find_clades2.py", line 105, in check_mono self.print_result(treeName, "IS_MONO", bipartition, name, tree, ofile, mult, clade) File "/repository/DiscoVista/src/utils/find_clades2.py", line 63, in print_result if RepresentsInt(support) and RepresentsInt(mult): File "/repository/DiscoVista/src/utils/find_clades2.py", line 9, in RepresentsInt float(s) TypeError: float() argument must be a string or a number

I do not know how to deal with it.. Thanks so much !!!!!

[bfauskee]

I have the same issue, error below: Number of trees found is: 4148 number of contracted trees is :4148 Number of trees to analyze is: 4148 WARNING some support was not available. Ignoring this branch length was: 2.0719e-06 clade was: [<Taxon 0x4003db8110 'Microcebus_tavaratra'>, <Taxon 0x4003db8050 'Microcebus_mittermeiri'>, <Taxon 0x4003db80d0 'Microcebus_jonahi'>] tree is: (Mirza_zaza:0.0021970387,Microcebus_murinus:0.17072803,(Microcebus_griseorufus:2.0719e-06,(Microcebus_ravelobensis:2.0719e-06,((Microcebus_tavaratra:0.0,Microcebus_jonahi:0.0):0.0,Microcebus_mittermeiri:0.0):2.0719e-06)26:2.0719e-06)37:2.0719e-06) analyzer.analyze() File "/repository/DiscoVista/src/utils/analyze.py", line 302, in analyze self.treesAnalyses() File "/repository/DiscoVista/src/utils/analyze.py", line 140, in treesAnalyses find_clades2.main(opt.names, opt.clades, outFile, multiplier, searchFiles) File "/repository/DiscoVista/src/utils/find_clades2.py", line 321, in main mono.analyze(tree, treeName, mult) File "/repository/DiscoVista/src/utils/find_clades2.py", line 172, in analyze self.analyze_clade(k, v, clade_comp, tree, treeName, mult, allBiparts) File "/repository/DiscoVista/src/utils/find_clades2.py", line 155, in analyze_clade self.check_mono(tree, treeName, taxa, name, len(taxa) == len(clade), ofile, mult, allBiparts) File "/repository/DiscoVista/src/utils/find_clades2.py", line 105, in check_mono self.print_result(treeName, "IS_MONO", bipartition, name, tree, ofile, mult, clade) File "/repository/DiscoVista/src/utils/find_clades2.py", line 63, in print_result if RepresentsInt(support) and RepresentsInt(mult): File "/repository/DiscoVista/src/utils/find_clades2.py", line 9, in RepresentsInt float(s) TypeError: float() argument must be a string or a number

Hopefully someone can provide some assistance!

[IanDMedeiros]

Getting the identical error. Running the latest version of DiscoVista on a RHEL hpc cluster and an a MacBook Pro---same issue with both.

[IanDMedeiros]

This seems to be an issue with IQ-TREE outputting zero-length branches where the length is printed as "" rather than "0".