depict_clades.R error

[francicco]

Hi,

I'm getting this error when depict_clades.R is executed.

[1] "species/results"
[1] "here"
[1] "/user/work/tk19812/software/DiscoVista/example/1KP/species/results"
[1] 0
[1] "/user/work/tk19812/software/DiscoVista/example/1KP/species/results"
[1] "bootstrap is numeric"
[1] "merging finished!"
[1] "working on counts ..."
[1] "reordering clades"
[1] "clades reordered!"
[1] "renaming and reordering model conditions ..."
[1] "model conditions reordered!"
NULL
Loading required package: reshape
Loading required package: plyr

Attaching package: ‘plyr’

The following objects are masked from ‘package:reshape’:

    rename, round_any

Loading required package: ggplot2
Loading required package: scales
Using Classification, CLADE, DS as id variables
Warning messages:
1: In type.convert.default(X[[i]], ...) :
  'as.is' should be specified by the caller; using TRUE
2: In type.convert.default(X[[i]], ...) :
  'as.is' should be specified by the caller; using TRUE
3: In type.convert.default(X[[i]], ...) :
  'as.is' should be specified by the caller; using TRUE
4: In type.convert.default(X[[i]], ...) :
  'as.is' should be specified by the caller; using TRUE
5: In type.convert.default(X[[i]], ...) :
  'as.is' should be specified by the caller; using TRUE
6: In type.convert.default(X[[i]], ...) :
  'as.is' should be specified by the caller; using TRUE

Any help? Thanks Best, F