erlun1

Results 7 comments of erlun1

find_gene_modules() error

emmmm i had the same error as yours. Error in `contrasts

ModuleNotFoundError: No module named 'fasta'

RiboCode uses pyfasta instead of the updated version pyfaidx, so I browsed through the source code of pyfasta and found that in the _init_.py file, the code from fasta import...

ModuleNotFoundError: No module named 'fasta'

additionally,"pyfasta" requires Python 2, while "RiboCode" requires Python 3.6 or above.So: In fasta.py, for Python 3.10 and above, from collections import Mapping should be changed to from collections.abc import Mapping....

Compilation failure

Please comment out the line Rf_warning(es.str().c_str()) on line 48 in the /src/routines.cpp script. This is just a warning and does not affect the software installation and normal use.

ConstructNetwork() and ModuleEigengenes() functions use different methods to calculate the ME (module eigengene), leading to the discrepancy in the kME result

Hi, I am pleasantly surprised to receive your reply so quickly. I understand your point, so in order to maintain the consistency of my data, would it be possible to...

How to get the over-all flux score in a "Supermodule"

I think I can answer your question: the article does not specify how to combine the flux values of the entire super module, but I believe this is reasonable. For...

Severe Performance Issues in IntegrateLayers and Sketch with Large-scale Data (2.2M Cells, 281 Samples)

**Update on Current Execution Times:** - `FindVariableFeatures` across 281 layers: **>15 hours** (observed) - `LeverageScore` calculation: **>10 hours and still running**