ModuleNotFoundError: No module named 'fasta'

[fulaibaowang]

Hi, I got a ModuleNotFoundError when testing the RiboCode installation with RiboCode_onestep -V Can you help?

$ RiboCode_onestep -V
Traceback (most recent call last):
  File "/nexus/posix0/MAGE-flaski/service/projects/data/Bioinformatics/bit_pipe_ribosome_profiling/libraries/venv3/bin/RiboCode_onestep", line 5, in <module>
    from RiboCode.RiboCode_onestep import main
  File "/nexus/posix0/MAGE-flaski/service/projects/data/Bioinformatics/bit_pipe_ribosome_profiling/libraries/venv3/lib/python3.9/site-packages/RiboCode/RiboCode_onestep.py", line 16, in <module>
    from .prepare_transcripts import *
  File "/nexus/posix0/MAGE-flaski/service/projects/data/Bioinformatics/bit_pipe_ribosome_profiling/libraries/venv3/lib/python3.9/site-packages/RiboCode/prepare_transcripts.py", line 17, in <module>
    from pyfasta import Fasta
  File "/nexus/posix0/MAGE-flaski/service/projects/data/Bioinformatics/bit_pipe_ribosome_profiling/libraries/venv3/lib/python3.9/site-packages/pyfasta/__init__.py", line 3, in <module>
    from fasta import Fasta, complement, DuplicateHeaderException
ModuleNotFoundError: No module named 'fasta'

my package list

$ pip3 list
Package            Version
------------------ ---------
AGEpy              0.8.2
autopaths          1.6.0
bcrypt             3.2.0
biomart            0.9.2
biopython          1.78
certifi            2020.12.5
cffi               1.14.5
chardet            4.0.0
charset-normalizer 3.1.0
click              7.1.2
coloredlogs        15.0
colormath          3.0.0
cryptography       3.4.6
cycler             0.10.0
decorator          4.4.2
et-xmlfile         1.0.1
future             0.18.2
h5py               3.1.0
HTSeq              0.13.5
humanfriendly      9.1
idna               2.10
ipaddress          1.0.23
jdcal              1.4.1
Jinja2             2.11.3
joblib             1.0.1
kiwisolver         1.3.1
lzstring           1.0.4
Markdown           3.3.4
MarkupSafe         1.1.1
matplotlib         3.3.4
minepy             1.2.6
multiqc            1.9
networkx           2.5
numpy              1.20.1
openpyxl           3.0.6
pandas             1.2.2
paramiko           2.7.2
patsy              0.5.1
Pillow             8.1.0
pip                23.0.1
plumbing           2.11.2
py                 1.11.0
pybedtools         0.8.1
pycparser          2.20
pyfasta            0.5.2
PyNaCl             1.4.0
pyparsing          2.4.7
pysam              0.16.0.1
python-dateutil    2.8.1
pytz               2021.1
PyYAML             5.4.1
requests           2.25.1
retry              0.9.2
RiboCode           1.2.15
scikit-learn       0.24.1
scipy              1.6.1
seaborn            0.11.1
setuptools         57.5.0
sh                 2.0.3
simplejson         3.17.2
six                1.15.0
spectra            0.0.11
statsmodels        0.12.2
suds-jurko         0.6
threadpoolctl      2.1.0
tqdm               4.65.0
urllib3            1.26.3
Wand               0.6.5
wheel              0.38.4
xlrd               2.0.1
XlsxWriter         1.3.7