Young
Young
There's a new version of metaphlan! According to the release notes, there are some new features https://github.com/biobakery/MetaPhlAn/releases/tag/4.1.1 There are new, updated databases, but these are not intended to be included...
There's a new version of ivar! It looks like this is mainly minor changes according to the release notes https://github.com/andersen-lab/ivar/releases/tag/v1.4.3 I, however, have made some major changes from the Dockerfile...
### What container needs an update? There are some new versions of Auspice, but I can't test the docker image. Someone other than me would need to create the new...
### What container needs an update? There are some new versions of Kaptive.
There's a new version of bowtie2! Release notes: https://github.com/BenLangmead/bowtie2/releases/tag/v2.5.4 Notably, this reverts some changes from 2.5.0. I updated bowtie2 to 2.5.4 and samtools to 1.20 ``` $ diff bowtie2/2.5.3/Dockerfile bowtie2/2.5.4/Dockerfile...
There's a new version of augur! Release notes: https://github.com/nextstrain/augur/releases/tag/24.4.0 All I did was copy the files from 24.3.0 and change the version ARG. The full diff ``` $ diff augur/24.{3,4}.0/Dockerfile...
There's a new version of freebayes! I will update this to a PR when a version with the pre-built binary becomes available. I ran into this error : ``` 3.519...
### What tool are you looking for and why? I'm going to be adding Viridian to Cecret, and it'd be awesome if there was a container in StaPH-B https://github.com/iqbal-lab-org/viridian
I don't know if this will be an issue to most of your users, but I installed dragonflye via micromamba in a gitpod environment and ran into the following error:...
Or maybe just generate a new workflow https://www.medrxiv.org/content/10.1101/2024.06.26.24308604v1