Young

### What tool are you looking for and why? I came across [assembly_snptyper](https://github.com/boasvdp/assembly_snptyper) via SLACK correspondence. I have found it useful to check if Group A Strep (GAS) isolates (generally...

adding poppunk version 2.6.5

1

There's a new version of poppunk! Release notes: https://github.com/bacpop/PopPUNK/releases/tag/v2.6.5 > Enables correct visualisation of external clustering. I just updated the software version ARG and adjusted the tabs for my text...

adding masurca version 4.1.3

8

There's a new version of MASURCA! (More info here: https://github.com/alekseyzimin/masurca/releases/tag/v4.1.1) I copied the files from 4.1.0 and made the following changes: - updated to ubuntu:jammy - updated the software version...

add ppanggolin version 2.0.5

1

There's a new version of PPANGGOLIN!!! This version is mostly bug fixes. https://github.com/labgem/PPanGGOLiN/releases I copied the prior Dockerfile and updated the software version ARG. Pull Request (PR) checklist: - [X]...

### What container needs an update? It looks like Gambit has a new version (https://github.com/jlumpe/gambit/releases). @kevinlibuit , are you or one of your colleagues planning on creating a new Dockerfile...

Serratia MLST Schemes

3

I learned through the ubioinfo slack channel that there is a MLST scheme for Serratia, but it doesn't appear to be included in the files that mlst-download_pub_mlst downloads. Is there...

Release a version

5

I know this tool is still in development, but I'm looking forward to your first working version. I want to create a docker container for sarscov2recombinants for the state public...

https://www.biorxiv.org/content/10.1101/2024.04.29.591666v1.full.pdf https://github.com/iqbal-lab-org/viridian

Update documentation

1

Like... majorly. [ ] tree of generated files [ ] available params and default values [ ] more FAQs

Adjust to nf-core template

2

To make it more portable.