Young
Young
There's a recent update to flye. According to the notes at https://github.com/fenderglass/Flye/releases/tag/2.9.1, this is a minor release that focuses on fixing bugs. I took the old dockerfile and changed the...
### What container needs an update? There's a new version of MultiQC. https://github.com/ewels/MultiQC/releases/tag/v1.13 I don't mind the biocontainers one, so I'll be using that in the meantime. The [ewels/multiqc](https://hub.docker.com/r/ewels/multiqc/tags) wasn't...
I've removed the lines for caching. I think this, in general, saves space in our GA repo, but I believe the cache is stopping Freyja from being created anew each...
### What functionality is this repo missing? We have several templates available in [dockerfile-template](https://github.com/StaPH-B/docker-builds/tree/master/dockerfile-template), but there could be more that may be useful. Additional templates: [ ] R-packages (like ggtree)...
Instead of using the older Dockerfiles for medaka, I copied the artic version [1.24-1.11.1 Dockerfile](https://github.com/StaPH-B/docker-builds/blob/master/artic/1.2.4-1.11.1/Dockerfile) and just removed all the artic lines. The prior medaka Dockerfile is for version 1.2.0,...
### What tool are you looking for and why? Mentioned by @SESchmedes on SLACK. Dorado basecalls nanopore data. There does not seem to be a biocontainers image, although there is...
### What tool are you looking for and why? Medaka is on biocontainers, which is fine, but biocontainers lags behind the current version by a bit. Medaka's license is as...
### What container needs an update? There's a newer version of skesa! Well, not really. It looks like skesa itself is still being called version 2.4.0, but saute is now...
### What tool are you looking for and why? The biocontainers image works great, but we don't currently have this one on StaPH-B
### What container needs an update? There's a new version of HMMER! http://cryptogenomicon.org/hmmer-3-4-release.html > Supports native ARM / Apple Silicon acceleration.