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Published 20 hours ago • verified publisher icon UPHL-BioNGS

Adjust to nf-core template

Open erinyoung opened this issue 2 years ago • 2 comments

To make it more portable.

erinyoung avatar Aug 15 '23 14:08 erinyoung

Notes :

There are some aspects of the nf-core template that I'd like to avoid, such as defining variables in the config file in such a way that they can not be overridden on the command line.

Other things can be adopted. For example, https://github.com/UPHL-BioNGS/Cecret/pull/221 uses the same process labels.

erinyoung avatar Aug 31 '23 22:08 erinyoung

Guide for how to do this : https://github.com/apetkau/nf-core-assemblyexample

erinyoung avatar Oct 10 '23 23:10 erinyoung

Appears to work fine

Image

erinyoung avatar Mar 20 '25 17:03 erinyoung