SCpubr
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enblacar
Generate high quality, publication ready visualizations for single cell transcriptomics data.
I'm using `SCpubr::do_FeaturePlot` with different arguments like `split.by`, `diverging.palette` etc... ``` SCpubr::do_FeaturePlot(scdata, features = c("signature"), reduction = "umap", split.by = "condition", ncol=4, order = TRUE, legend.title = "myCAF_Custom Signature", font.size...
I was wondering how easy/feasible would be to keep duplicated genes when plot genes from a list (clustering using facets). With an example: genes
Hello, Love this package for nice single-cell visualizations! I have a bit of a problem. I am working with a large `anndata` object that I am unable to convert to...
Hello! I think I might have found a bug in do_DimPlot function **Bug:** ``` When using do_DimPlot and split.by or group.by, I get combined plot and plots for each category...
Hi there! I would like to know whether there is a way to extract the coordinates for each cell in the plot. Also being able to determine the min and...
Hi there! I am interested in using one of the new features, `do_DiffusionMapPlot,` but I am having issues getting the plots out. I am using ``` SCpubr::do_DiffusionMapPlot(sample = sample, input_gene_list...
It has been a while that `do_FeaturePlot` has a strange behaviour. The legend title is not displayed anymore. library(SCpubr) options("SCpubr.ColorPaletteEnds" = TRUE) exp_Integrated
**Feature request:** ``` # I am trying to make multiple ridge plots, all with the same scale. # When using ggplot2’s command coord_cartesian to scale the graphs equally along the...
Hi, Love your package and hope to continue using it! I believe `SCpubr` has support for `Seuratv5` but I was having some trouble with the `do_DimPlot` function. Am I missing...