Erik Garrison
Ah so the quasi dictionary is sufficient. What a silly idea I had. A checksum or other hash into any small number of bits would provide the same guarantees. This...
Is this feasible to do? I'd love to test astarix, and a standard output format like this is critical to do that!
It won't matter for assembly graphs, but aligning to the paths will be much more sensitive in the case of variation graphs. The alignments can be made against the path...
@rlorigro `wfmash -m -N -p 90` will generate contiguous approximate mappings of nanopore reads. You can remove `-m` to get a base-level alignment obtained by global pairwise alignment of each...
Thanks, this was very helpful to know. On Tue, Mar 7, 2017 at 3:36 PM Heng Li wrote: > why is picard bam2fastq a bad idea > > Because 1)...
I'm wondering how easy it would be to work from the paper on progressive POA: https://doi.org/10.1093/bioinformatics/bth126.
Did you apt install libxcb-shape0-dev?
This will also make it easy to scale to longer sequences, provided your seed chaining can do it. BiWFA uses order divergence space and is consequently very cache coherent and...
The recombination rate "hotspots" correspond to segmental duplication loci. These might be violating the model assumptions. On the other hand, it is highly possible based on what we're seeing in...
Also, I can give bug reports but, I was working on spot and myself didn't have the most clearly set up environment. So I thought it best to ask what...