Erik Garrison
Loving this! Just a reminder to update the build instructions to reflect the current setup and dependencies.
This syncs #64 with the development branch. It's a trivial merge except for a few manual adjustments due to git merge failures.
In releases you've posted a series of semi-static binaries, where at least Qt is statically built into the binary. How were these made?
Many of the graphs that I want to apply Bandage to visualize are larger than 10M in length. As a result, they are hard to render within the node width...
I'm attempting to generate an image for a moderate-sized graph. I've stripped the sequences out to try to make it easier. I was able to render the graph on my...
This is a GFA produced by SGA on a small test set: ``` S 3 GGGTAGACACCACACCACAATGACCCGTTTGACAGCACCACACCAGTTGACAGTAGACGT S 4 ACCACACCAGTTGACAGTAGACGTACCACCACACAGTGACGATGGGCGTTAGACGTAACAACCAGATTGAGACGGATGGGGACACCAGT S 6 CAACCAGATTGAGACGGATGGGGACACCAGTGTCCCATTACAGTGACACGATTACCCCAGTAGACGATAGGACGATAGAGACGATAGGACAG S 5 CAACCAGATTGAGACGGATGGGGACACCAGTATCCCATTACAGTGACACGATTACCCCAGTAGACGATAGGACGATAGAGACGATAGGACAG S 2 GGGTAGACACCACACCACAATGACCCGTTTGACAGTACCACACCAGTTGACAGTAGACGT S 7...
Gfaestus is very good at loading large, complex variation graphs for whole human chromosomes. It also works very well on smaller subgraphs, where the odgi layout algorithm can be run...
The cmake build could be helpful. It seems that madvise helps, but I didn't profile extensively. If you're uncomfortable merging that, I can drop it.
There is a lot going on here, but my understanding is that a number of issues have been resolved. I think it's important to synchronize things. Upstream dozeu continues to...
I'm cleaning up the integration of dozeu into vg. (Thanks again @ocxtal !!) I've run into an issue where it seems that the query_length which dozeu is giving is longer...