Erik Garrison

I agree with @lh3 that path+string graphs will not solve the difficulties of the liftover problem. However, they will at least enable us to represent particular mappings between different assemblies...

If you trigger an error when any part of the query is out of bounds, then the client needs to be very careful to maintain a list of references and...

Errors are ideal, but there is an economy to features of the API. Each new error type will need to be implemented by servers and handled by clients. It's also...

@lbergelson this is exactly the kind of situation I'm referring to as presenting an additional difficulty for clients. If we implement this specific error, all clients will need to maintain...

While I appreciate the importance of a precise API and data format definition that is machine readable and testable, I worry that this is premature. Perhaps we can resolve this...

> the major conceptual difference is to demote the role of linear sequences We retain the importance of linear sequences so long as they can described in the graph. I...

@denizkural Do you have any documentation on what an edge graph is and how it's not compatible with the graphs that put sequence labels on their nodes?

@oleksandr Actually, you can handle multiple input and output streams with shell. You can `tee` to multiple named pipes, for instance, or `pee` one input to multiple subshells defined by...

@nicolasmccurdy I'm going to attempt to clarify, as I think there is some confusion about what I'm proposing. For instance, I didn't intend to imply this at all: > For...

I just realized that there are many cmakeification PRs here. Is this project not active anymore?