pathfindR

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Duplicated factor level when creating term_gene_heatmap

12

Hello, I'm getting this bug when attempting to make the term_gene_heatmap for GO_BP results. Execution is halted here for GO_BP but not for the other pathways that I've been able...

Dane-Z

Reproducible results

1

I have been playing around with this package and so far it works great. However, I noticed that the results are not reproducible - when I run `run_pathfindR` twice with...

lardenoije

Hi I am running pathfindR with default parameters with 10 iterations and it is taking 10 n_processes as n_processes was set to NULL. Can you please help how many CPUS...

Nitin123-4

Cannot find the logo file

12

Thank you so much for developing this great tool. I have been using pathfindR for few weeks now. It was working smoothly on R-4.1.2. I have recently updated the R...

fazeliniah

Running run_pathfindr on multiple gene_sets

2

Hello! I tried to run this line: `run_pathfindR(input, adj_method = "fdr", iterations = 10, n_processes = 4, gene_sets = c("KEGG", "Reactome","GO-BP", "GO-MF"))` But it returns an error: Error in if...

CDSchuster