Eduard Kerkhoven

Revisiting I think I now understand partially what this aimed to do: - `protein_location_sce.tsv` is a list with GO term annotation of unknown source - If a gene is annotated...

`randomSampling` code was fixed in #505

To support the work on yeast-GEM: https://github.com/SysBioChalmers/yeast-GEM/pull/330. The `metDeltaG` and `rxnDeltaG` fields are `double` vectors with same length as `mets` and `rxns`. - [x] Add support by `writeYAMLmodel` and `readYAMLmodel`...

It will not be solved. It was remained open and pinned to make it easily findable for people running into this issue. I have since learned how to check if...

@ericamanga, this is indeed a Matlab error, but perhaps one of the three following approaches work. I have to admit that only the third one works on my computer, but...

All tests pass, failure seems to be related with posting the test result in the PR.

Indeed, loading kcat values from GotEnzymes could also be covered by this function. Besides GotEnzymes there would currently be only DLKcat that would provide some table with kcat values, but...

This partially overlaps with #157, where the latter issue is about the file format (and this would also be how e.g. BRENDA database is provided), while the issue here is...

This function should indeed just read 1) manually curated kcat values (see also https://github.com/SysBioChalmers/GECKO/discussions/169). 2) and 3) would be separate functions, as it coudl also be retrieved via API (GotEnzymes)...

[`selectKcatValue`](https://github.com/SysBioChalmers/GECKO/blob/f987feded59c51c99e2d0064d068a2a8dfdfeed6/geckomat/gather_kcats/selectKcatValue.m) can now take a `kcatList` of kcat values that are matched to specific reactions. `readKcatTable` should therefore read a TSV file and/or GotEnzymes (could also be separate function), and...