Erick Armingol

Hi! It could be due to the version of matplotlib you are using. Which version are you using? I recommend using v.3.7.3. Also, if you are using plotnine in combination...

Hi! Quick question, which python version and cell2cell version are you using? You might need creating a new environment with proper versions I think. This could be a good starting...

I think before trying a new environment you should try updating cell2cell to the latest version (0.7.4), the legend issue was solved in v0.7.0 (see [notes here](https://github.com/earmingol/cell2cell/blob/master/release/0.7.0-notes.md)). I think you...

Can you show me what error you get with the new pandas version? I could generate a quick fix for that to allow compatibility. Anyways, I don't think you need...

Oh this issue shouldn't happen with the latest version of cell2cell, it was already fixed :) so feel free to update pandas if you want

Looks like you data have duplicated gene names. You could try using ```adata.var_names_make_unique()``` before running the pipeline.

Hi! this issue seems to be associated with the version of the tool umap (https://github.com/lmcinnes/umap). You can try creating an environment following the instructions here: https://github.com/saezlab/ccc_protocols/tree/main/env_setup

From the shape (12, 0) it tells that you have 12 samples, but for some reason none LR pairs is being detected. This issue could be either when specifying the...

@dbdimitrov I don't remember including a requirement of a python version, I guess it is related to other packages as requirement of cell2cell?

@dbdimitrov I just removed the strict requirement of gseapy, can you test if this works with ``` pip install -U git+https://github.com/earmingol/cell2cell@new_version ```