Erick Armingol
Erick Armingol
Same is happening to me, which is breaking all tests of a tool I am developing, and uses squidpy (therefore spatialdata too) as a requirement: ``` from spatialdata import SpatialData...
Hello @georginaalbadri, In Tensor-cell2cell you can treat each sample as a context if you want to, it doesn't necessarily have to be a condition like a disease for example. If...
Hi! using mouse doesn't support `pathwaydb="KEGG"`, you have to change it to `pathwaydb="GOBP"` or `pathwaydb="Reactome"`
Thanks for reporting this. Once I find time I'll try fixing this!
This has been finally fixed! It was an issue with newer versions of MkDocs :)
Sorry the delay, I have been swamped with other things recently. Unfortunately data loaders would not work here because tensor factorization doesn't work with batches as neural networks do. Our...
Seems like an issue with the kneed library. This could be due some changes they made in more recent versions or something is hapenning with your data. Since it says...
Hi @rbutleriii From the errors, it seems to be an issue with the tool scanpy, which is imported by cell2cell. I suggest trying older or newer versions of scanpy and...
If you scroll down a bit in the link you should find the table with the versions (look for Software Requirements Table). Also pandas 2+ generates a lot of issues...
Hello, I think the issue is due to the version of seaborn. The package used to perform statistical analyses and annotate boxplots requires a different version of seaborn (e.g. 0.13.0)....