Duarte

Related to issue #81 Bed file output using the 5th column (score) for counts

4

You indicated you where willing to accept a PR for changing the behaviour of mosdepth so that it does not remove content present in input bed region file, I am...

Bed file validation not following bed specifications

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I tried using mosdepth with a bed file that has the fields separated by spaces instead of tabs and it complains: [mosdepth] skipping bad bed line:chrY 7711640 7711641 rs879195003 This...

Hi Guys I was using groupBy and noticed something a bit annoying and I was wondering if you could improve it. assume I have a file with this content: MPL...

Invalid -f Argument in windowBed

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What steps will reproduce the problem? 1. windowBed -a file1.bed -b file2.bed -c f 1.0 What is the expected output? What do you see instead? I expect counts of the...

namespacing based on config?

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Thank you for your efforts. This library has a lot of what I want, especially the ability to to easily parse a input config file. But was wondering if you...

seg fault

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Hi ... I would very much like to test your script ...but I do not seem to get it to work I have complied it ate testing running with: `BFCounter...

unused sub targetAudit in code?

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Hi guys... you might have noticed I have forked your software and been cleaning up some of the code to modify it and and a few features I would like...

if you run your test scripts on you test data included on the repo you come across un-initialized values for the @calcSampleRatio line 1173 I believe the issue is on...

Better handling of sex chromossomes

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Hi ... Thank your for your software... I have been testing it and got some nice calls on one of my panels... however... I have a panel that only has...

Feature Request: input bam list file instead of folders

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I believe file describing the bam files to analyse would be a good improvement instead of a folder. This would also enable additional metadata to be tagged to each bam...