Daniel Bunis

Results 15 comments of Daniel Bunis

Perhaps we should add an `if !require("scran") { stop('scran package is required for de.method="wilcox" or "t"') }`? I believe this `require()` conditional method is the recommendation from Bioconductor's developer guidelines,...

Such a base function sounds pretty good to me! Would allow me to remove the 5 similar, though each manually made more specific, functions from dittoSeq. Such a function could...

Also, yes forgot about but totally meant *`requireNamespace()`!

I sometimes have tasks requiring multiple suggested packages, so would definitely vote for something which can check a set of packages. Perhaps the algorithm framework could be something like this:...

Yes, yes. Sorry for the delay.. back from a long vacation today! I know where this is from and can definitely address it this week **if we want to** @LTLA....

One extra note though: As noted in other issues, using the SCTranformed assay is not recommended. You might get better results with the "RNA" assay.

Hey there! Thanks so much for the kind note and the suggestion! This is an interesting idea. I'd not noticed this Seurat feature add before, but it definitely seems like...

Can I ask if there's been progress on this front? I've been using vcr for testing my package, and it's been pretty easy, so thanks so much for a wonderful...

Worked! Simple to set up based off of the `vcr_configure()` code I already had for testing, & I was able to knit my vignette with my internet connection turned off...

Yes yes! Fell off my radar, but it's back on for this week. I'll put something together by the weekend.