aptasuite

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Hi, When I am trying to load configuration.aptasuite file (to see the analysis result), there is the problem of error invoking Selection cycle backend. Even we have tried with high-end...

arghyasett

I really interested in this program. But when I try to call it in command line I get an error message in the end: Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 0...

igo111

Error invoking construtor of AptamerPool backend Problem on GUI

1

Hi I have no coding experience and I am using the GUI of the AptaSUITE to get results for my Aptamer project. After I load all my Fastq files on...

tejabhiram

aptamer pool tab hanging

1

Hello, I was able to parse the fastq files in aptasuite v.0.9.4. (the gui) but afterwards, the aptamer pool tab keeps calculating without showing any data. I got the following...

nl82

In aptaCluster section, I ran AptaMut. In the popout window, several columns says "CMP" where it should be "CPM". Also if you pick "Raw Counts" instead of "CPM", those columns...

Eggsorer

Error invoking construtor of AptamerPool backend

1

Hello, I am trying to use AptaSuite but am having issues setting up (windows 10, aptasuite0.9.4). The executable jar file works but after inputting and choosing fastq files to open...

rredman22

TL, DR: I would like to have a feature where it prints out the reason why aptasuite rejected every one of the rejected sequences. And a summary of rejected sequences....

Eggsorer

DNA secondary structure motif analysis

2

Hi, AptaSuite asks for using CapR for secondary structures prediction but this program calculates RNA folding. Do you have any suggestions how to involve DNA secondary structure prediction in AptaSuite?...

meszlili96

Allow different primers for different rounds of SELEX

2

It would be nice to be able to specify different 5' and 3' ends for different rounds, or have the option to do so. We use a method that requires...

khuntco

Enrichment vs. Counts

1

We are working with Aptasuit for the MiSeq sequencing data. After analysis we are observing that the count number is equal to the enrichment round over round. Can you provide...

DeRosaLab