Andreas Dräger
Andreas Dräger
The SBML format allows authors to embed their contact information in the form of a VCard, including given name(s) and surname(s), organization, and e-mail address. Also, there are fields for...
The library axis:axis is in version below 1.4 and needs to be upgraded.
It was reported by Deepa Maheshvare that the characters used to do the quote in the notes that pose problem in models generated by KEGGtranslator.
The following issue has been raised as a consequence of failing tests of the SBMLTestSuite using SBSCL (the Systems Biology Simulation Core Library). As it turns out, the problem goes...
When listening to changes in a model, the `TreeNodeChangeListener` is activated when a previously undefined double value is explicitly set to NaN but then nothing happens because we are comparing...
ModelBuilder is a very convenient utility class that helps building or extending models. At the moment it assumes that elements to be added do not exists. There could be clashes...
The clone [constructor](https://github.com/sbmlteam/jsbml/blob/02c9b7db7b493105fdf690e7abe0adc76ffa3225/extensions/fbc/src/org/sbml/jsbml/ext/fbc/GeneProduct.java#L119) in `GeneProduct` only calls its superconstructor. In addition, it should also copy all of its attributes, `label` in particular (which is a required attribute). As of now,...
The flattening algorithm implemented in JSBML should be improved. A better version has been implemented in the form of a [fork](https://github.com/eikept/jsbml). It is nearly ready but requires more extensive testing...
Lambda expressions are placeholders that are filled with arguments when the expression is called. Consequently, their units can in many cases not directly be derived if arguments are passed to...
JSBML's validation capabilities have greatly improved and are now very reliable. In some situations, the online validation can be problematic, e.g., if no network connection is available or when the...