Andreas Dräger

You can always request new SBO terms as needed using this form: https://sourceforge.net/p/sbo/term-request/

4. Just in case, check also for the presence of a `modifierSpeciesReference` on that `Reaction` whose `sboTerm` attribute is a child of the term `catalyst` (see http://www.ebi.ac.uk/sbo/main/tree?open=14&nodeId=14#SBO_14_0).

It is definitely possible to annotate a `modifierSpeciesReferences` using appropriate qualifiers to express how it is formed. There could be, for instance, a relationship between the modifier and genes using...

Well, you can, of course, write any resource in a MIRIAM annotation that you like, such as a gene identifier within the model. However, the idea is her also to...

One case, however, that could be checked is if the model is accessible at all. Here is an example for a published model in form of a password-protected Excel file:...

@ChristianLieven Frankly, I doubt that any reviewer ever tryed to open the model at all, neither did the editor.

@BenjaSanchez this looks very good! Maybe [SBTab](https://sbtab.net) could be a good solution for a git-based community reconstruction project. It is compatible with the standard format [SBML](http://sbml.org) but can be stored...

As @matthiaskoenig points out, taxonomy is no problem. All models in the BiGG database should make use of that feature. A more natural way of encoding sequence information is using...

An alternative solution could be to do only one online check, namely to compare the MIRIAM XML file's date at http://identifiers.org/download/ to one that MeMoTe could ship (or contain). If...

When storing the SBO file within a distribution of COBRApy, it is crucial to make it exchangeable. The SBO is still growing. New subterms may be added, and all of...