Palantir
Palantir copied to clipboard
dpeerlab
Single cell trajectory detection
I tried to follow the example of "Palantir analysis notebook", and an error message was reported with “palantir.preprocess.log_transform ” function, and an error message with "Adding a nonzero scalar to...
Hi all, first of all thanks for providing useful tools! I have some questions about running palantir. **First, When I assign terminal_states for running `palantir.core.run_palantir`, I'm confusing the index parameter...
Thanks for creating such a great tool! I tested with my data following the tutorial step by step, however, when I run "sc.pp.neighbors(adata, n_neighbors=10, n_pcs=40)" always got the same err:...
Setting the random seed does not lead to exactly reproducible results, you can easily check this in an example, just set the random seed, run palantir twice and compare the...
I am trying to run the gene expression trends, however, I am getting the following error message with the R package "gam". I installed the package, but still the same...
Hello, Thank you for developing a very powerful package for studying developmental questions! I am using Palantir to analyze my data. I have two questions about the code in your...
Hi, Thank you for your work with Palantir. I have been running into issues with `imputed_X = palantir.utils.run_magic_imputation(ad,n_jobs=16)` (or any n_jobs > 1). I get the following warning shortly after...
Hello, I am trying to run Palantir on my dataset to be able to eventually use Cellrank2. I am getting an error message (pasted below). I have loaded the scipy...
Dear Palantir developers, @ManuSetty Palantir is an excellent tool for trajectory analysis, but I have a problem now. My input is a published dataset containing Oligodendrocytes lineage cells(Cell lines with...
Dear developing team, I have a very basic problem. After succesfully installing Palantir with pip install palantir, I am not able to load the package into my notebook, instead I...
