Dan MacGuigan

icon indicating a website link https://scholar.google.com/citations?hl=en&user=ugCVaHMAAAAJ

icon company NOAA National Marine Fisheries Service icon location Washington, D.C. icon location Personal Account -- NOAA Fisheries OST, National Systematics Lab -- Smithsonian National Museum of Natural History

Results 7 comments of Dan MacGuigan

*.hic + *.assembly generated by 3d-dna cannot be edited in juicebox 2.16 [BUG]

Was there ever a solution to this? I'm having the same problem more than a year later

tar: Unexpected EOF in archive

I know this issue is already closed, but the new tarball for 0.7.3 works fine now

RuntimeError with Shared Tensors in DNABERT-2-117M Configuration Using run_mlm.py

I'm also hitting the same error. Anyone find a solution?

RuntimeError with Shared Tensors in DNABERT-2-117M Configuration Using run_mlm.py

I seem to have found a workaround by including the `--save_safetensors False` argument for the `run_mlm-mod.py` script

groovy.lang.MissingMethodException after upgrading to latest Nextflow release

Also I should note that this bug is somewhat time sensitive, as I'm supposed to be running a workshop using this nextflow config on Thursday (12/11)

groovy.lang.MissingMethodException after upgrading to latest Nextflow release

Thanks for the quick response! My full codebase is [here](https://github.com/Smithsonian/MitoPilot). `opts` is a process input read from an SQL database, see [here](https://github.com/Smithsonian/MitoPilot/blob/342dae25c6dd8b3eafda8a21569ee7fafabe6eea/inst/nextflow/modules/preprocess.nf#L13) and [here](https://github.com/Smithsonian/MitoPilot/blob/342dae25c6dd8b3eafda8a21569ee7fafabe6eea/inst/nextflow/modules/preprocess_workflow.nf#L4) for an example. Mostly I'm confused...

pickerInput doesn't work with shiny v1.11.0

Same issue for me here, broke my R package. Thanks @IvanM26 for brining this up.