Dan MacGuigan
My labmate and I have encountered an issue with the SLURM version of Juicer v.1.6. We are using a Linux computing cluster: LSB Version: :core-4.1-amd64:core-4.1-noarch Distributor ID: CentOS Description: CentOS...
Hello, I am attempting to run RepeatMasker on my University's computing cluster. Specifically, I am using your [Nexflow pipeline](https://github.com/Dfam-consortium/RepeatMasker_Nextflow). I have also [posted this error on the GitHub page for...
Hello, I am attempting to use the `snapclust` function in Adegenet v.2.1.3. Unfortunately, I've encountered the following warning message, as discussed by a previous poster (https://github.com/thibautjombart/adegenet/issues/221) ``` Large dataset syndrome:...
Hello, Our lab has been using hifiasm for a number of genome assembly projects. We are using Nanopore reads (kit 14 chemistry, R10.4.1 flow cells) that have been error-corrected with...
Hello, I am trying to unpack the latest version of Dorado (0.7.3). However, I encounter the following error suggesting that the tarball is corrupted. ``` dmacguig@vortex-future:~/project/software/Dorado$ wget https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.3-linux-x64.tar.gz --2024-08-01 10:56:11--...
I'm encountering an error message after upgrading from Nextflow 25.04.3 to the latest release (25.10.2). My NF config worked perfectly fine with the previous version. ``` Dec-09 16:14:39.042 [Task submitter]...
Hello, Using the following code, I end up with a strange grid that is missing many random cells (similar to https://github.com/r-barnes/dggridR/issues/61 and https://github.com/r-barnes/dggridR/issues/52). Link to the "TENN-CUMB_box.shp" that I'm using...
Hello, I'm attempting to make a demes YAML by hand using using the results from a GADMA analysis. However, demes has a very specific definition of migration rate. From https://popsim-consortium.github.io/demes-spec-docs/main/specification.html#migration...
Hello, I'm attempting to run a 5 population model using the Moments engine with `SMAC_BO_combination` Bayesian optimization. GADMA has been running for 50 hours but still reports `No models yet`....
Hello, I am attempting to set up a model with the Moments engine, but I'm running into trouble with poor documentation. It seems GADMA is stuck using an older version...